miRBase entry: ppc-mir-8364n

Stem-loop ppc-mir-8364n

Accession

MI0026951

Description

Pristionchus pacificus ppc-mir-8364n precursor miRNA

Sequence

UCUUCAUUCCACAUGCUUUCUCAgccaaucaagcagacgaGAUAGCGUAUGGAAUGAAGAGA
(((((((((((.(((((.((((.((.......))....)))).))))).)))))))))))..

Structure

--           C     U    ---A  ca 
  UCUUCAUUCCA AUGCU UCUC    gc  a
  ||||||||||| ||||| ||||    ||  u
  AGAAGUAAGGU UGCGA AGag    cg  c
AG           A     U    caga  aa

Annotation confidence Not enough data

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Genome context

ABKE03000122.1: 632770-632831 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8364n

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8364n-5p

Accession	MIMAT0033045
Description	Pristionchus pacificus ppc-miR-8364n-5p mature miRNA
Sequence	1 - UCUUCAUUCCACAUGCUUUCUCA - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8364n-3p

Accession	MIMAT0033046
Description	Pristionchus pacificus ppc-miR-8364n-3p mature miRNA
Sequence	41 - GAUAGCGUAUGGAAUGAAGAGA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260