Stem-loop ppc-mir-8275

Accession

MI0026953

Description

Pristionchus pacificus ppc-mir-8275 precursor miRNA

Sequence

GGCGACUUGUCCAGAAUCACACAggguucucaauccugUGCUUCUGGAUGGAGUCGUCAAA
((((((((.(((((((...(((((((((...))))))))).)))))))..))))))))...

Structure

---        -G       UCA         c 
   GGCGACUU  UCCAGAA   CACAggguu  
   ||||||||  |||||||   ||||||||| u
   CUGCUGAG  AGGUCUU   GUguccuaa  
AAA        GU       --C         c 

Annotation confidence Low

Genome context

ABKE03000092.1: 2613527-2613587 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8275

Mature ppc-miR-8275-5p

• Accession: MIMAT0033049
• Description: Pristionchus pacificus ppc-miR-8275-5p mature miRNA
• Sequence: 1 - GGCGACUUGUCCAGAAUCACACA - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8275-3p

• Accession: MIMAT0033050
• Description: Pristionchus pacificus ppc-miR-8275-3p mature miRNA
• Sequence: 39 - UGCUUCUGGAUGGAGUCGUCAAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260