miRBase entry: ppc-mir-8276

Stem-loop ppc-mir-8276

Accession

MI0026954

Description

Pristionchus pacificus ppc-mir-8276 precursor miRNA

Sequence

AUUGGCACUCUUUUUCUUUUUGaaaaauaaaagaauuuaAAAAGAAAAAGAAGUGCUAAUCC
((((((((((((((((((((((((...........))))))))))))))).)))))))))..

Structure

--         -               aaau 
  AUUGGCACU CUUUUUCUUUUUGaa    a
  ||||||||| |||||||||||||||    a
  UAAUCGUGA GAAAAAGAAAAauuu    a
CC         A               aaga

Annotation confidence Not enough data

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Genome context

ABKE03000076.1: 268175-268236 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8276

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8276-5p

Accession	MIMAT0033051
Description	Pristionchus pacificus ppc-miR-8276-5p mature miRNA
Sequence	1 - AUUGGCACUCUUUUUCUUUUUG - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8276-3p

Accession	MIMAT0033052
Description	Pristionchus pacificus ppc-miR-8276-3p mature miRNA
Sequence	40 - AAAAGAAAAAGAAGUGCUAAUCC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260