Stem-loop ppc-mir-8280

Accession

MI0026959

Description

Pristionchus pacificus ppc-mir-8280 precursor miRNA

Sequence

AACCCGAUCCAACUUGAUCGUUucugugcaauggcagcagcccaaCGAUCUAUUUCGAUCAGGUCCC
.(((.((((......(((((((.((((((....))).)))...)))))))......)))).)))...

Structure

--A   C    CAACUU       --u   -   a 
   ACC GAUC      GAUCGUU   cug ugc a
   ||| ||||      |||||||   ||| |||  
   UGG CUAG      CUAGCaa   gac acg u
CCC   A    CUUUAU       ccc   g   g 

Annotation confidence Not enough data

Genome context

ABKE03000024.1: 401894-401960 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-8280

Mature ppc-miR-8280-5p

• Accession: MIMAT0033061
• Description: Pristionchus pacificus ppc-miR-8280-5p mature miRNA
• Sequence: 1 - AACCCGAUCCAACUUGAUCGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8280-3p

• Accession: MIMAT0033062
• Description: Pristionchus pacificus ppc-miR-8280-3p mature miRNA
• Sequence: 46 - CGAUCUAUUUCGAUCAGGUCCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260