Stem-loop ppc-mir-8282a

Accession

MI0026962

Description

Pristionchus pacificus ppc-mir-8282a precursor miRNA

Sequence

CCACCAAGAAUUGUGCCAUAUCUguauugcaaucagcUAUGAUAGUAUUCUUGGUGACA
.((((((((((..((.((((.(((.........))).)))).))..))))))))))...

Structure

--C          UG  C    U   uau 
   CACCAAGAAU  UG CAUA CUg   u
   ||||||||||  || |||| |||   g
   GUGGUUCUUA  AU GUAU gac   c
ACA          UG  A    c   uaa 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 226753-226811 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ppc-mir-8282a

Mature ppc-miR-8282a-5p

• Accession: MIMAT0033067
• Description: Pristionchus pacificus ppc-miR-8282a-5p mature miRNA
• Sequence: 1 - CCACCAAGAAUUGUGCCAUAUCU - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8282a-3p

• Accession: MIMAT0033068
• Description: Pristionchus pacificus ppc-miR-8282a-3p mature miRNA
• Sequence: 38 - UAUGAUAGUAUUCUUGGUGACA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260