Stem-loop ppc-mir-8285

Accession

MI0026966

Description

Pristionchus pacificus ppc-mir-8285 precursor miRNA

Sequence

CCCGCCCCUGCGUACUGACUAUCugaacccaacucuauugaUGUCAUGACGCAGGAUUGGAUU
.(((..(((((((..((((.(((................)))))))..)))))))..)))...

Structure

--C   CC       AC    U   ugaaccc 
   CCG  CCUGCGU  UGAC AUC       a
   |||  |||||||  |||| |||        
   GGU  GGACGCA  ACUG Uag       a
UUA   UA       GU    -   uuaucuc 

Annotation confidence Low

Genome context

ABKE03000123.1: 4492435-4492497 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from ppc-mir-8285

Mature ppc-miR-8285-5p

• Accession: MIMAT0033075
• Description: Pristionchus pacificus ppc-miR-8285-5p mature miRNA
• Sequence: 1 - CCCGCCCCUGCGUACUGACUAUC - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8285-3p

• Accession: MIMAT0033076
• Description: Pristionchus pacificus ppc-miR-8285-3p mature miRNA
• Sequence: 42 - UGUCAUGACGCAGGAUUGGAUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260