miRBase entry: ppc-mir-8286a

Stem-loop ppc-mir-8286a

Accession

MI0026967

Description

Pristionchus pacificus ppc-mir-8286a precursor miRNA

Sequence

ACCGCACCAUGCUCUAUCCAUCucgaauugagugaguUGGCAAGAACUUUGGCACGGCCU
.(((..(((.(.(((..(((.((((.......)))).)))..))).)..)))..)))...

Structure

--A   CA   -U C   AU   U    aa 
   CCG  CCA  G UCU  CCA Cucg  u
   |||  |||  | |||  ||| ||||  u
   GGC  GGU  C AGA  GGU gagu  g
UCC   AC   UU A   AC   u    ga

Annotation confidence Not enough data

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Genome context

ABKE03000123.1: 4482612-4482671 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8286a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8286a-5p

Accession	MIMAT0033077
Description	Pristionchus pacificus ppc-miR-8286a-5p mature miRNA
Sequence	1 - ACCGCACCAUGCUCUAUCCAUC - 22
Evidence	experimental SOLiD [1]

Mature ppc-miR-8286a-3p

Accession	MIMAT0033078
Description	Pristionchus pacificus ppc-miR-8286a-3p mature miRNA
Sequence	38 - UGGCAAGAACUUUGGCACGGCCU - 60
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260