Stem-loop ppc-mir-2238l

Accession

MI0026968

Description

Pristionchus pacificus ppc-mir-2238l precursor miRNA

Sequence

CCGUCCACUCUUCCUGUCAAUGguuugauuugaaugaccAAUGGCGGAUUAGUGGAUGUGA
.((((((((..(((.((((.(((((..........))))).)))))))..))))))))...

Structure

--C        CU   U    A     ugau 
   CGUCCACU  UCC GUCA UGguu    u
   ||||||||  ||| |||| |||||     
   GUAGGUGA  AGG CGGU Accag    u
AGU        UU   -    A     uaag 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1189264-1189324 [-]

Mature ppc-miR-2238l-5p

• Accession: MIMAT0033079
• Description: Pristionchus pacificus ppc-miR-2238l-5p mature miRNA
• Sequence: 1 - CCGUCCACUCUUCCUGUCAAUG - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-2238l-3p

• Accession: MIMAT0033080
• Description: Pristionchus pacificus ppc-miR-2238l-3p mature miRNA
• Sequence: 40 - AAUGGCGGAUUAGUGGAUGUGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260