miRBase entry: ppc-mir-8288

Stem-loop ppc-mir-8288

Accession

MI0026971

Description

Pristionchus pacificus ppc-mir-8288 precursor miRNA

Sequence

GCAUGGAACGUAUCGAUUCACCGuauacuugaaugaacggUGAAAGACACAUUCCAUGGGCAG
.(((((((.((.((..((((((((............)))))))).)).)).))))))).....

Structure

----G       C  A  GA        auacu 
     CAUGGAA GU UC  UUCACCGu     u
     ||||||| || ||  ||||||||      
     GUACCUU CA AG  AAGUggca     g
GACGG       A  C  -A        aguaa

Annotation confidence Not enough data

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Genome context

ABKE03000003.1: 124844-124906 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8288-5p

Accession	MIMAT0033085
Description	Pristionchus pacificus ppc-miR-8288-5p mature miRNA
Sequence	1 - GCAUGGAACGUAUCGAUUCACCG - 23
Evidence	experimental SOLiD [1]

Mature ppc-miR-8288-3p

Accession	MIMAT0033086
Description	Pristionchus pacificus ppc-miR-8288-3p mature miRNA
Sequence	41 - UGAAAGACACAUUCCAUGGGCAG - 63
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260