Stem-loop ppc-mir-8289

Accession

MI0026974

Description

Pristionchus pacificus ppc-mir-8289 precursor miRNA

Sequence

ACCGAGUACUCUGUUCCUAAUuggggcacaguccaagacaauUAGGAUAUGGUGCUACUCGGUGA
(((((((((.(((((((((((((((((...))))....))))))))).)))).).))))))))..

Structure

--        - U    -         ----    a 
  ACCGAGUA C CUGU UCCUAAUug    gggc  
  |||||||| | |||| |||||||||    |||| c
  UGGCUCAU G GGUA AGGAUuaac    ccug  
AG        C U    U         agaa    a 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1909032-1909096 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8289

Mature ppc-miR-8289-5p

• Accession: MIMAT0033091
• Description: Pristionchus pacificus ppc-miR-8289-5p mature miRNA
• Sequence: 1 - ACCGAGUACUCUGUUCCUAAU - 21
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8289-3p

• Accession: MIMAT0033092
• Description: Pristionchus pacificus ppc-miR-8289-3p mature miRNA
• Sequence: 43 - UAGGAUAUGGUGCUACUCGGUGA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260