miRBase entry: ppc-mir-8293

Stem-loop ppc-mir-8293

Accession

MI0026979

Description

Pristionchus pacificus ppc-mir-8293 precursor miRNA

Sequence

UCGGCCAAUUUAUCUUUCAGCcucauaacugaaggauggAUGAAAGAUAAAAGUGGUCGGCA
.((((((.(((((((((((.((((..........)).)).)))))))))))..))))))...

Structure

--U      -A           G  -  auaa 
   CGGCCA  UUUAUCUUUCA Cc uc    c
   ||||||  ||||||||||| || ||     
   GCUGGU  AAAUAGAAAGU gg ag    u
ACG      GA           A  u  gaag

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ABKE03000052.1: 388705-388766 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8293

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8293-5p

Accession	MIMAT0033099
Description	Pristionchus pacificus ppc-miR-8293-5p mature miRNA
Sequence	1 - UCGGCCAAUUUAUCUUUCAGC - 21
Evidence	experimental Illumina [1]

Mature ppc-miR-8293-3p

Accession	MIMAT0033100
Description	Pristionchus pacificus ppc-miR-8293-3p mature miRNA
Sequence	40 - AUGAAAGAUAAAAGUGGUCGGCA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260