Stem-loop ppc-mir-8295

Accession

MI0026981

Description

Pristionchus pacificus ppc-mir-8295 precursor miRNA

Sequence

UUUCAUAUCUCGCCCAUAGGCCCucgacaacuuguaaucgaguACCUUUGGCGAUAUGUGGAGCG
((((((((.(((((...(((..(((((..........)))))..)))..))))).))))))))..

Structure

--        C     CAU   CC     caac 
  UUUCAUAU UCGCC   AGG  Cucga    u
  |||||||| |||||   |||  |||||     
  GAGGUGUA AGCGG   UCC  gagcu    u
GC        U     -UU   Au     aaug 

Annotation confidence Low

Genome context

ABKE03000104.1: 248500-248564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8295

Mature ppc-miR-8295-5p

• Accession: MIMAT0033103
• Description: Pristionchus pacificus ppc-miR-8295-5p mature miRNA
• Sequence: 1 - UUUCAUAUCUCGCCCAUAGGCCC - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8295-3p

• Accession: MIMAT0033104
• Description: Pristionchus pacificus ppc-miR-8295-3p mature miRNA
• Sequence: 44 - ACCUUUGGCGAUAUGUGGAGCG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260