Stem-loop ppc-mir-8296

Accession

MI0026982

Description

Pristionchus pacificus ppc-mir-8296 precursor miRNA

Sequence

UCGAGAUGAUGGAGAGCGCCUAgaguauauaauucauugucagagugaugcagUACGCUCUCACGCCCGUCCUA
....((((.(((((((((..((..((((...((((.......)))).))))..))))))))).))..))))...

Structure

UCGA    -A  -       CC  ga    aua    au 
    GAUG  UG GAGAGCG  UA  guau   auuc  u
    ||||  || |||||||  ||  ||||   ||||  g
    CUGC  GC CUCUCGC  AU  cgua   ugag  u
-AUC    CC  A       --  ga    --g    ac 

Annotation confidence Low

Genome context

ABKE03000020.1: 216648-216721 [+]

Mature ppc-miR-8296-5p

• Accession: MIMAT0033105
• Description: Pristionchus pacificus ppc-miR-8296-5p mature miRNA
• Sequence: 1 - UCGAGAUGAUGGAGAGCGCCUA - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8296-3p

• Accession: MIMAT0033106
• Description: Pristionchus pacificus ppc-miR-8296-3p mature miRNA
• Sequence: 54 - UACGCUCUCACGCCCGUCCUA - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260