Stem-loop ppc-mir-8297

Accession

MI0026985

Description

Pristionchus pacificus ppc-mir-8297 precursor miRNA

Sequence

AUUCCCUGCUUGGUGAUUGCUgguuuccuggcugacauaaccucuguuaggugcguuaaagagugaUUCCUUCGAGCAUCGAGAGCA
.....((.(((((((.(((..((..((((...((((...((((.....))))..))))...)).))..))..))).)))))))))..

Structure

AUUCC  G       A   CU  uu  -  ggc    aua    c 
     CU CUUGGUG UUG  gg  uc cu   ugac   accu u
     || ||||||| |||  ||  || ||   ||||   |||| g
     GA GAGCUAC AGC  CC  ag ga   auug   ugga u
---AC  -       G   UU  UU  u  gaa    -cg    u 

Annotation confidence Low

Genome context

ABKE03000100.1: 90727-90813 [-]

Mature ppc-miR-8297-5p

• Accession: MIMAT0033111
• Description: Pristionchus pacificus ppc-miR-8297-5p mature miRNA
• Sequence: 1 - AUUCCCUGCUUGGUGAUUGCU - 21
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8297-3p

• Accession: MIMAT0033112
• Description: Pristionchus pacificus ppc-miR-8297-3p mature miRNA
• Sequence: 67 - UUCCUUCGAGCAUCGAGAGCA - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260