Stem-loop ppc-mir-8299

Accession

MI0026987

Description

Pristionchus pacificus ppc-mir-8299 precursor miRNA

Sequence

UAGUGUUUUAGUUGCGUACAAAcauucaucgguuuUGCACAUAAUUAAAGCACUACC
((((((((((((((.((.(((((........).)))).)).))))))))))))))..

Structure

--              C  A    - auu 
  UAGUGUUUUAGUUG GU CAAA c   c
  |||||||||||||| || |||| |    
  AUCACGAAAUUAAU CA GUuu g   a
CC              A  C    u gcu 

Annotation confidence Low

Genome context

ABKE03000073.1: 226063-226119 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ppc-mir-8299

Mature ppc-miR-8299-5p

• Accession: MIMAT0033115
• Description: Pristionchus pacificus ppc-miR-8299-5p mature miRNA
• Sequence: 1 - UAGUGUUUUAGUUGCGUACAAA - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8299-3p

• Accession: MIMAT0033116
• Description: Pristionchus pacificus ppc-miR-8299-3p mature miRNA
• Sequence: 36 - UGCACAUAAUUAAAGCACUACC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260