miRBase entry: ppc-mir-8299

Stem-loop ppc-mir-8299

Accession

MI0026987

Description

Pristionchus pacificus ppc-mir-8299 precursor miRNA

Sequence

UAGUGUUUUAGUUGCGUACAAAcauucaucgguuuUGCACAUAAUUAAAGCACUACC
((((((((((((((.((.(((((........).)))).)).))))))))))))))..

Structure

--              C  A    - auu 
  UAGUGUUUUAGUUG GU CAAA c   c
  |||||||||||||| || |||| |    
  AUCACGAAAUUAAU CA GUuu g   a
CC              A  C    u gcu

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 226063-226119 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ppc-mir-8299

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8299-5p

Accession	MIMAT0033115
Description	Pristionchus pacificus ppc-miR-8299-5p mature miRNA
Sequence	1 - UAGUGUUUUAGUUGCGUACAAA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8299-3p

Accession	MIMAT0033116
Description	Pristionchus pacificus ppc-miR-8299-3p mature miRNA
Sequence	36 - UGCACAUAAUUAAAGCACUACC - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260