miRBase entry: ppc-mir-8300

Stem-loop ppc-mir-8300

Accession

MI0026988

Description

Pristionchus pacificus ppc-mir-8300 precursor miRNA

Sequence

UCCAGUAGUGUCGUGAACCAAAugcagccacauaaucauuuuUGGUUAGCGACAUUGCUGGUGC
.(((((((((((((.(((((((..................))))))).)))))))))))))...

Structure

--U             G       ugcagcca 
   CCAGUAGUGUCGU AACCAAA        c
   ||||||||||||| |||||||         
   GGUCGUUACAGCG UUGGUuu        a
CGU             A       uuacuaau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ABKE03000073.1: 238228-238291 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppc-mir-8300

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8300-5p

Accession	MIMAT0033117
Description	Pristionchus pacificus ppc-miR-8300-5p mature miRNA
Sequence	1 - UCCAGUAGUGUCGUGAACCAAA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8300-3p

Accession	MIMAT0033118
Description	Pristionchus pacificus ppc-miR-8300-3p mature miRNA
Sequence	43 - UGGUUAGCGACAUUGCUGGUGC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260