Stem-loop ppc-mir-8300

Accession

MI0026988

Description

Pristionchus pacificus ppc-mir-8300 precursor miRNA

Sequence

UCCAGUAGUGUCGUGAACCAAAugcagccacauaaucauuuuUGGUUAGCGACAUUGCUGGUGC
.(((((((((((((.(((((((..................))))))).)))))))))))))...

Structure

--U             G       ugcagcca 
   CCAGUAGUGUCGU AACCAAA        c
   ||||||||||||| |||||||         
   GGUCGUUACAGCG UUGGUuu        a
CGU             A       uuacuaau 

Annotation confidence Low

Genome context

ABKE03000073.1: 238228-238291 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppc-mir-8300

Mature ppc-miR-8300-5p

• Accession: MIMAT0033117
• Description: Pristionchus pacificus ppc-miR-8300-5p mature miRNA
• Sequence: 1 - UCCAGUAGUGUCGUGAACCAAA - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8300-3p

• Accession: MIMAT0033118
• Description: Pristionchus pacificus ppc-miR-8300-3p mature miRNA
• Sequence: 43 - UGGUUAGCGACAUUGCUGGUGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260