miRBase entry: ppc-mir-8364u

Stem-loop ppc-mir-8364u

Accession

MI0026991

Description

Pristionchus pacificus ppc-mir-8364u precursor miRNA

Sequence

UCUCUCCAUUCCGCGUGCUCCCUcgucgguuagagaugaggagAGAGCUCGCGAUAUGAAGAGGC
.((((.(((..((((.(((((((((((.......)))))))...)))).))))..))).))))..

Structure

-U    C   UC    U    ---       gg 
  CUCU CAU  CGCG GCUC   CCUcguc  u
  |||| |||  |||| ||||   |||||||  u
  GAGA GUA  GCGC CGAG   ggaguag  a
CG    A   UA    U    Aga       ag

Annotation confidence Not enough data

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Genome context

ABKE03000108.1: 79940-80004 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8364u

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8364u-5p

Accession	MIMAT0033123
Description	Pristionchus pacificus ppc-miR-8364u-5p mature miRNA
Sequence	1 - UCUCUCCAUUCCGCGUGCUCCCU - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8364u-3p

Accession	MIMAT0033124
Description	Pristionchus pacificus ppc-miR-8364u-3p mature miRNA
Sequence	44 - AGAGCUCGCGAUAUGAAGAGGC - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260