Stem-loop ppc-mir-8307

Accession

MI0027000

Description

Pristionchus pacificus ppc-mir-8307 precursor miRNA

Sequence

UAUGAGACUGCCGUCCUCAACCaaaguugcagugcguUUGAGUUUAUGGUAGUGUCAUAGC
(((((.((((((((.(((((.....((......))..)))))...)))))))).)))))..

Structure

--     G        --C     CCaaa  ug 
  UAUGA ACUGCCGU   CUCAA     gu  c
  ||||| ||||||||   |||||     ||   
  AUACU UGAUGGUA   GAGUU     cg  a
CG     G        UUU     ---ug  ug 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 235868-235928 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from ppc-mir-8307

Mature ppc-miR-8307-5p

• Accession: MIMAT0033140
• Description: Pristionchus pacificus ppc-miR-8307-5p mature miRNA
• Sequence: 1 - UAUGAGACUGCCGUCCUCAACC - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8307-3p

• Accession: MIMAT0033141
• Description: Pristionchus pacificus ppc-miR-8307-3p mature miRNA
• Sequence: 38 - UUGAGUUUAUGGUAGUGUCAUAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260