miRBase entry: ppc-mir-8356b

Stem-loop ppc-mir-8356b

Accession

MI0027002

Description

Pristionchus pacificus ppc-mir-8356b precursor miRNA

Sequence

AAUUUGAGAUUCGCGUGGUUGCAUuagaauaugaugaagaugCACCAUGGUGAUUCUUGAAUUCA
(((((((((.(((((((((.(((((.............)))))))))).)))).)))))))))..

Structure

--         U    -     U     agaau 
  AAUUUGAGA UCGC GUGGU GCAUu     a
  ||||||||| |||| ||||| |||||     u
  UUAAGUUCU AGUG UACCA Cguag     g
AC         U    G     -     aagua

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 236097-236161 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8356b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8356b-5p

Accession	MIMAT0033144
Description	Pristionchus pacificus ppc-miR-8356b-5p mature miRNA
Sequence	1 - AAUUUGAGAUUCGCGUGGUUGCAU - 24
Evidence	experimental Illumina [1]

Mature ppc-miR-8356b-3p

Accession	MIMAT0033145
Description	Pristionchus pacificus ppc-miR-8356b-3p mature miRNA
Sequence	43 - CACCAUGGUGAUUCUUGAAUUCA - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260