Stem-loop ppc-mir-8356b

Accession

MI0027002

Description

Pristionchus pacificus ppc-mir-8356b precursor miRNA

Sequence

AAUUUGAGAUUCGCGUGGUUGCAUuagaauaugaugaagaugCACCAUGGUGAUUCUUGAAUUCA
(((((((((.(((((((((.(((((.............)))))))))).)))).)))))))))..

Structure

--         U    -     U     agaau 
  AAUUUGAGA UCGC GUGGU GCAUu     a
  ||||||||| |||| ||||| |||||     u
  UUAAGUUCU AGUG UACCA Cguag     g
AC         U    G     -     aagua 

Annotation confidence Low

Genome context

ABKE03000073.1: 236097-236161 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8356b

Mature ppc-miR-8356b-5p

• Accession: MIMAT0033144
• Description: Pristionchus pacificus ppc-miR-8356b-5p mature miRNA
• Sequence: 1 - AAUUUGAGAUUCGCGUGGUUGCAU - 24
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8356b-3p

• Accession: MIMAT0033145
• Description: Pristionchus pacificus ppc-miR-8356b-3p mature miRNA
• Sequence: 43 - CACCAUGGUGAUUCUUGAAUUCA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260