Stem-loop ppc-mir-8309

Accession

MI0027004

Description

Pristionchus pacificus ppc-mir-8309 precursor miRNA

Sequence

205 reads, 38.0 reads per million, 12 experiments

UGGCAAUGCGUUCAGCUGCCAGCGUcaaucucacagagaauaagcgcacACUGGAGCUGAGCAGAGCCGGC
((((..(((..((((((.(((((((...((((...))))....))))....))))))))))))..))))..

Structure

--    AA   GU      G   ----    -caa    a 
  UGGC  UGC  UCAGCU CCA    GCGU    ucuc  
  ||||  |||  |||||| |||    ||||    |||| c
  GCCG  ACG  AGUCGA GGU    cgcg    agag  
CG    AG   --      -   CAca    aaua    a 

Annotation confidence High

Genome context

ABKE03000092.1: 2484244-2484314 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8309

Mature ppc-miR-8309-5p

• Accession: MIMAT0033148
• Description: Pristionchus pacificus ppc-miR-8309-5p mature miRNA
• Sequence: 1 - UGGCAAUGCGUUCAGCUGCCAGCGU - 25
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8309-3p

• Accession: MIMAT0033149
• Description: Pristionchus pacificus ppc-miR-8309-3p mature miRNA
• Sequence: 50 - ACUGGAGCUGAGCAGAGCCGGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260