Stem-loop ppc-mir-8311

Accession

MI0027006

Description

Pristionchus pacificus ppc-mir-8311 precursor miRNA

Sequence

UGAUUGUGAGAUUCCCAAAUUGaauaccguauucaaugucaAUUUGAGUCUCGCACAGUCACA
((((((((((((((....((((((((...))))))))........))))))))))..))))..

Structure

--    --          ----CCAA        c 
  UGAU  UGUGAGAUUC        AUUGaaua  
  ||||  ||||||||||        |||||||| c
  ACUG  ACGCUCUGAG        uaacuuau  
AC    AC          UUUAacug        g 

Annotation confidence Low

Genome context

ABKE03000003.1: 125411-125473 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8311

Mature ppc-miR-8311-5p

• Accession: MIMAT0033152
• Description: Pristionchus pacificus ppc-miR-8311-5p mature miRNA
• Sequence: 1 - UGAUUGUGAGAUUCCCAAAUUG - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8311-3p

• Accession: MIMAT0033153
• Description: Pristionchus pacificus ppc-miR-8311-3p mature miRNA
• Sequence: 42 - AUUUGAGUCUCGCACAGUCACA - 63
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260