miRBase entry: ppc-mir-8313

Stem-loop ppc-mir-8313

Accession

MI0027008

Description

Pristionchus pacificus ppc-mir-8313 precursor miRNA

Sequence

AUCCGCAAAAACUACUAGUAGACCacauuuggaugcggCCCUAGUAGUUAUUUGCGGAUCA
((((((((((((((((((..(.((.(((....))).))).))))))))).)))))))))..

Structure

--         -         UA A  a   u 
  AUCCGCAAA AACUACUAG  G CC cau u
  ||||||||| |||||||||  | || |||  
  UAGGCGUUU UUGAUGAUC  C gg gua g
AC         A         -C -  c   g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ABKE03000107.1: 3747592-3747652 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-8313

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8313-5p

Accession	MIMAT0033156
Description	Pristionchus pacificus ppc-miR-8313-5p mature miRNA
Sequence	1 - AUCCGCAAAAACUACUAGUAGACC - 24
Evidence	experimental Illumina [1]

Mature ppc-miR-8313-3p

Accession	MIMAT0033157
Description	Pristionchus pacificus ppc-miR-8313-3p mature miRNA
Sequence	39 - CCCUAGUAGUUAUUUGCGGAUCA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260