Stem-loop ppc-mir-8313

Accession

MI0027008

Description

Pristionchus pacificus ppc-mir-8313 precursor miRNA

Sequence

AUCCGCAAAAACUACUAGUAGACCacauuuggaugcggCCCUAGUAGUUAUUUGCGGAUCA
((((((((((((((((((..(.((.(((....))).))).))))))))).)))))))))..

Structure

--         -         UA A  a   u 
  AUCCGCAAA AACUACUAG  G CC cau u
  ||||||||| |||||||||  | || |||  
  UAGGCGUUU UUGAUGAUC  C gg gua g
AC         A         -C -  c   g 

Annotation confidence Low

Genome context

ABKE03000107.1: 3747592-3747652 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-8313

Mature ppc-miR-8313-5p

• Accession: MIMAT0033156
• Description: Pristionchus pacificus ppc-miR-8313-5p mature miRNA
• Sequence: 1 - AUCCGCAAAAACUACUAGUAGACC - 24
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8313-3p

• Accession: MIMAT0033157
• Description: Pristionchus pacificus ppc-miR-8313-3p mature miRNA
• Sequence: 39 - CCCUAGUAGUUAUUUGCGGAUCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260