miRBase entry: ppc-mir-8364w

Stem-loop ppc-mir-8364w

Accession

MI0027011

Description

Pristionchus pacificus ppc-mir-8364w precursor miRNA

Sequence

UCUUCAUUCCAUACGCUAUCUCGucugcuugauuggcugagAAAGCAUGUGGAAUGAAGAAAG
(((((((((((((.(((.(((((...(((.....)))))))).))).)))))))))))))...

Structure

---             C   A     ucu   u 
   UCUUCAUUCCAUA GCU UCUCG   gcu g
   ||||||||||||| ||| |||||   ||| a
   AGAAGUAAGGUGU CGA Agagu   cgg u
GAA             A   A     ---   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ABKE03000122.1: 632767-632829 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8364w

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8364w-5p

Accession	MIMAT0033161
Description	Pristionchus pacificus ppc-miR-8364w-5p mature miRNA
Sequence	1 - UCUUCAUUCCAUACGCUAUCUCG - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8364w-3p

Accession	MIMAT0033162
Description	Pristionchus pacificus ppc-miR-8364w-3p mature miRNA
Sequence	42 - AAAGCAUGUGGAAUGAAGAAAG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260