Stem-loop ppc-mir-8338-1

Accession

MI0027013

Description

Pristionchus pacificus ppc-mir-8338-1 precursor miRNA

Sequence

AUCUGCCACUACUAACCGUGucguacucacuacuacacgacACGGUUAGUAGUGGCAGAUGA
((((((((((((((((((((((((............))))))))))))))))))))))))..

Structure

--                        acuca 
  AUCUGCCACUACUAACCGUGucgu     c
  ||||||||||||||||||||||||      
  UAGACGGUGAUGAUUGGCAcagca     u
AG                        cauca 

Annotation confidence Not enough data

Genome context

ABKE03000062.1: 2095739-2095800 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8338-1

Mature ppc-miR-8338-5p

• Accession: MIMAT0033165
• Description: Pristionchus pacificus ppc-miR-8338-5p mature miRNA
• Sequence: 1 - AUCUGCCACUACUAACCGUG - 20
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8338-3p

• Accession: MIMAT0033166
• Description: Pristionchus pacificus ppc-miR-8338-3p mature miRNA
• Sequence: 42 - ACGGUUAGUAGUGGCAGAUGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260