Stem-loop ppc-mir-8316

Accession

MI0027015

Description

Pristionchus pacificus ppc-mir-8316 precursor miRNA

Sequence

UGCGACGUCGGACAAUCCCUCgaauaaaucgauaaauaauccaccuaccguaugcucgAUGGUGUCCAGGUCGUCGC
.(((((((((((((..((.((((......((.................)).....)))).))))))).)).))))))

Structure

U      -  -     AU  C    auaaau  auaaaua 
 GCGACG UC GGACA  CC UCga      cg       a
 |||||| || |||||  || ||||      ||       u
 CGCUGC GG CCUGU  GG Agcu      gc       c
-      U  A     --  U    -cguau  cauccac 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 5011100-5011176 [+]

Mature ppc-miR-8316-5p

• Accession: MIMAT0033169
• Description: Pristionchus pacificus ppc-miR-8316-5p mature miRNA
• Sequence: 1 - UGCGACGUCGGACAAUCCCUC - 21
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8316-3p

• Accession: MIMAT0033170
• Description: Pristionchus pacificus ppc-miR-8316-3p mature miRNA
• Sequence: 59 - AUGGUGUCCAGGUCGUCGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260