Stem-loop ppc-mir-8315-2

Accession

MI0027016

Description

Pristionchus pacificus ppc-mir-8315-2 precursor miRNA

Sequence

AGCCUCAGACAUUCUUGUAUGUCGcgaauugaagcgAUACCAGUCUGGAUGAGGCUGA
(((((((..((..((.((..(((((........))))))).))..))..)))))))..

Structure

--       GA  UU  U  AU     gaa 
  AGCCUCA  CA  CU GU  GUCGc   u
  |||||||  ||  || ||  |||||    
  UCGGAGU  GU  GA CA  UAgcg   u
AG       AG  CU  C  --     aag 

Annotation confidence Low

Genome context

ABKE03000107.1: 3739478-3739535 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-8315-2

Mature ppc-miR-8315-3p

• Accession: MIMAT0033168
• Description: Pristionchus pacificus ppc-miR-8315-3p mature miRNA
• Sequence: 37 - AUACCAGUCUGGAUGAGGCUGA - 58
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8315-2-5p

• Accession: MIMAT0033171
• Description: Pristionchus pacificus ppc-miR-8315-2-5p mature miRNA
• Sequence: 1 - AGCCUCAGACAUUCUUGUAUGUCG - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260