miRBase entry: ppc-mir-8320

Stem-loop ppc-mir-8320

Accession

MI0027021

Description

Pristionchus pacificus ppc-mir-8320 precursor miRNA

Sequence

AAUCCGAGCUUCGGCCUGUGACAcgggacgaaguugUCACUAGACCGAGCAGGGGUUCA
(((((..(((.(((.(((((((((........).)))))).)).))))))..)))))..

Structure

--     GA   U   C  -      - ggg 
  AAUCC  GCU CGG CU GUGACA c   a
  |||||  ||| ||| || |||||| |    
  UUGGG  CGA GCC GA CACUgu g   c
AC     GA   -   A  U      u aag

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 227746-227804 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from ppc-mir-8320

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8320-5p

Accession	MIMAT0033180
Description	Pristionchus pacificus ppc-miR-8320-5p mature miRNA
Sequence	1 - AAUCCGAGCUUCGGCCUGUGACA - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8320-3p

Accession	MIMAT0033181
Description	Pristionchus pacificus ppc-miR-8320-3p mature miRNA
Sequence	37 - UCACUAGACCGAGCAGGGGUUCA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260