Stem-loop ppc-mir-8320

Accession

MI0027021

Description

Pristionchus pacificus ppc-mir-8320 precursor miRNA

Sequence

AAUCCGAGCUUCGGCCUGUGACAcgggacgaaguugUCACUAGACCGAGCAGGGGUUCA
(((((..(((.(((.(((((((((........).)))))).)).))))))..)))))..

Structure

--     GA   U   C  -      - ggg 
  AAUCC  GCU CGG CU GUGACA c   a
  |||||  ||| ||| || |||||| |    
  UUGGG  CGA GCC GA CACUgu g   c
AC     GA   -   A  U      u aag 

Annotation confidence Low

Genome context

ABKE03000073.1: 227746-227804 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from ppc-mir-8320

Mature ppc-miR-8320-5p

• Accession: MIMAT0033180
• Description: Pristionchus pacificus ppc-miR-8320-5p mature miRNA
• Sequence: 1 - AAUCCGAGCUUCGGCCUGUGACA - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8320-3p

• Accession: MIMAT0033181
• Description: Pristionchus pacificus ppc-miR-8320-3p mature miRNA
• Sequence: 37 - UCACUAGACCGAGCAGGGGUUCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260