miRBase entry: ppc-mir-8322

Stem-loop ppc-mir-8322

Accession

MI0027023

Description

Pristionchus pacificus ppc-mir-8322 precursor miRNA

Sequence

CCGACCACUUUUAUCUUUCAUCCauccuucaguuaugaggCUGAAAGAUAAAUUGGCCGAUA
.((.(((..(((((((((((.((.....(((....))))).))))))))))).))).))...

Structure

--C  A   CU           U  auccu   g 
   CG CCA  UUUAUCUUUCA CC     uca u
   || |||  ||||||||||| ||     |||  
   GC GGU  AAAUAGAAAGU gg     agu u
AUA  C   -U           C  -----   a

Annotation confidence Not enough data

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Genome context

ABKE03000052.1: 388703-388764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8322

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8322-5p

Accession	MIMAT0033184
Description	Pristionchus pacificus ppc-miR-8322-5p mature miRNA
Sequence	1 - CCGACCACUUUUAUCUUUCAUCC - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8322-3p

Accession	MIMAT0033185
Description	Pristionchus pacificus ppc-miR-8322-3p mature miRNA
Sequence	41 - CUGAAAGAUAAAUUGGCCGAUA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260