miRBase entry: ppc-mir-8245b

Stem-loop ppc-mir-8245b

Accession

MI0027024

Description

Pristionchus pacificus ppc-mir-8245b precursor miRNA

Sequence

UGACUGCUCUCUGUCAAGUUGUUggaaucgaagcaacUACUUGUACAAUGAGCGGUUAGA
(((((((((..((((((((.((((.........)))).))))).)))..)))))))))..

Structure

--         UC   -     U    gaa 
  UGACUGCUC  UGU CAAGU GUUg   u
  |||||||||  ||| ||||| ||||   c
  AUUGGCGAG  ACA GUUCA caac   g
AG         UA   U     U    gaa

Annotation confidence Not enough data

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Genome context

ABKE03000092.1: 2478674-2478733 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8245b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8245b-5p

Accession	MIMAT0033186
Description	Pristionchus pacificus ppc-miR-8245b-5p mature miRNA
Sequence	1 - UGACUGCUCUCUGUCAAGUUGUU - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8245b-3p

Accession	MIMAT0033187
Description	Pristionchus pacificus ppc-miR-8245b-3p mature miRNA
Sequence	38 - UACUUGUACAAUGAGCGGUUAGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260