Stem-loop ppc-mir-8329

Accession

MI0027032

Description

Pristionchus pacificus ppc-mir-8329 precursor miRNA

Sequence

ACUCUGACCAUUUCACUUAAUugccaaaucgaagguaauUAAGUAGUUUUGCGUCAGAGCGA
.(((((((((...((((((((((((........))))))))))).)...)).)))))))...

Structure

--A       -  UUU -           aaa 
   CUCUGAC CA   C ACUUAAUugcc   u
   ||||||| ||   | |||||||||||    
   GAGACUG GU   G UGAAUuaaugg   c
AGC       C  UUU A           aag 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1910869-1910930 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8329

Mature ppc-miR-8329-5p

• Accession: MIMAT0033202
• Description: Pristionchus pacificus ppc-miR-8329-5p mature miRNA
• Sequence: 1 - ACUCUGACCAUUUCACUUAAU - 21
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8329-3p

• Accession: MIMAT0033203
• Description: Pristionchus pacificus ppc-miR-8329-3p mature miRNA
• Sequence: 40 - UAAGUAGUUUUGCGUCAGAGCGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260