miRBase entry: ppc-mir-8331

Stem-loop ppc-mir-8331

Accession

MI0027034

Description

Pristionchus pacificus ppc-mir-8331 precursor miRNA

Sequence

UGCGCCACGAUAGGCGAGAUCAGAuuauuugaguuucugAUCUCCCGUUCGUGUCGAUGC
..((.(((((..((.(((((((((...........)))))))))))..))))).))....

Structure

--UG  C     UA  C         uuau 
    CG CACGA  GG GAGAUCAGA    u
    || |||||  || |||||||||    u
    GC GUGCU  CC CUCUAgucu    g
CGUA  U     UG  -         uuga

Annotation confidence Not enough data

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Genome context

ABKE03000020.1: 742022-742081 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8331

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8331-5p

Accession	MIMAT0033206
Description	Pristionchus pacificus ppc-miR-8331-5p mature miRNA
Sequence	1 - UGCGCCACGAUAGGCGAGAUCAGA - 24
Evidence	experimental SOLiD [1]

Mature ppc-miR-8331-3p

Accession	MIMAT0033207
Description	Pristionchus pacificus ppc-miR-8331-3p mature miRNA
Sequence	40 - AUCUCCCGUUCGUGUCGAUGC - 60
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260