miRBase entry: ppc-mir-8333

Stem-loop ppc-mir-8333

Accession

MI0027036

Description

Pristionchus pacificus ppc-mir-8333 precursor miRNA

Sequence

AUCAAGAGUUCAUCGUUUUGACggggcaaauguguaggcaguCAAACGGUGCCCUUUUGAAGA
.(((((((..((((((((.(((...(((....))).....)))))))))))..)))))))...

Structure

--A       UU        U   --ggg   a 
   UCAAGAG  CAUCGUUU GAC     gca a
   |||||||  |||||||| |||     |||  
   AGUUUUC  GUGGCAAA Cug     ugu u
AGA       CC        -   acgga   g

Annotation confidence Not enough data

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Genome context

ABKE03000076.1: 2723486-2723548 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8333

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8333-5p

Accession	MIMAT0033210
Description	Pristionchus pacificus ppc-miR-8333-5p mature miRNA
Sequence	1 - AUCAAGAGUUCAUCGUUUUGAC - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8333-3p

Accession	MIMAT0033211
Description	Pristionchus pacificus ppc-miR-8333-3p mature miRNA
Sequence	43 - CAAACGGUGCCCUUUUGAAGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260