Stem-loop ppc-mir-8335

Accession

MI0027038

Description

Pristionchus pacificus ppc-mir-8335 precursor miRNA

Sequence

GGACAUCAAGACGCCUCAGGCACAUUuaucauGUUGUUGUUGUUGUUUUGCCUCUAG
(((...((((((((..(((..((((.....))))..)))..).)))))))..)))..

Structure

--   CAU       - CU   GC    U 
  GGA   CAAGACG C  CAG  ACAU u
  |||   ||||||| |  |||  |||| a
  UCU   GUUUUGU G  GUU  UGua u
GA   -CC       U UU   GU    c 

Annotation confidence Low

Genome context

ABKE03000060.1: 7660153-7660209 [+]

Mature ppc-miR-8335-5p

• Accession: MIMAT0033214
• Description: Pristionchus pacificus ppc-miR-8335-5p mature miRNA
• Sequence: 1 - GGACAUCAAGACGCCUCAGGCACAUU - 26
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8335-3p

• Accession: MIMAT0033215
• Description: Pristionchus pacificus ppc-miR-8335-3p mature miRNA
• Sequence: 33 - GUUGUUGUUGUUGUUUUGCCUCUAG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260