Stem-loop ppc-mir-8340

Accession

MI0027044

Description

Pristionchus pacificus ppc-mir-8340 precursor miRNA

Sequence

GUCGCGGAAUGCCCGUGUAUGCcggccauuggaugugcUUACCGGGCGCAUCUGCGACCU
((((((((.((((((.(((.((((.((...)).)).)).)))))))))..))))))))..

Structure

--        -A      U   U  -  g  a 
  GUCGCGGA  UGCCCG GUA GC cg cc  
  ||||||||  |||||| ||| || || || u
  CAGCGUCU  GCGGGC CAU cg gu gg  
UC        AC      -   U  u  a  u 

Annotation confidence Low

Genome context

ABKE03000031.1: 559439-559498 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8340

Mature ppc-miR-8340-5p

• Accession: MIMAT0033225
• Description: Pristionchus pacificus ppc-miR-8340-5p mature miRNA
• Sequence: 1 - GUCGCGGAAUGCCCGUGUAUGC - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8340-3p

• Accession: MIMAT0033226
• Description: Pristionchus pacificus ppc-miR-8340-3p mature miRNA
• Sequence: 39 - UUACCGGGCGCAUCUGCGACCU - 60
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260