Stem-loop ppc-mir-8342

Accession

MI0027046

Description

Pristionchus pacificus ppc-mir-8342 precursor miRNA

Sequence

CGAACAAGAGCUCUGAGCAUuggcauauuuuagugaauggucgcgcagagugaaugGUCCUGGGUGUUGUUCAAC
.((((((.(.((..((.((((.((...(((..((((....))))..))))).)))).))..)).).))))))...

Structure

--C      G G  CU  G    g  aua   ua    a 
   GAACAA A CU  GA CAUu gc   uuu  guga u
   |||||| | ||  || |||| ||   |||  ||||  
   CUUGUU U GG  CU guaa ug   aga  cgcu g
CAA      G G  UC  G    g  ---   cg    g 

Annotation confidence Low

Genome context

ABKE03000123.1: 3678033-3678107 [+]

Mature ppc-miR-8342-5p

• Accession: MIMAT0033229
• Description: Pristionchus pacificus ppc-miR-8342-5p mature miRNA
• Sequence: 1 - CGAACAAGAGCUCUGAGCAU - 20
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8342-3p

• Accession: MIMAT0033230
• Description: Pristionchus pacificus ppc-miR-8342-3p mature miRNA
• Sequence: 57 - GUCCUGGGUGUUGUUCAAC - 75
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260