Stem-loop ppc-mir-8344

Accession

MI0027049

Description

Pristionchus pacificus ppc-mir-8344 precursor miRNA

Sequence

GCUGCGGAGGAUUUAGAUGaaaguaauuaucgugguugcuuugaUUUGUACUCCUCGCGUUUCGC
((.((((((((..(((((.((((((((((...)))))))))).)))))...))))).)))...))

Structure

  --U   -     -UU     G          u 
GC   GCG GAGGA   UAGAU aaaguaauua  
||   ||| |||||   ||||| |||||||||| c
CG   UGC CUCCU   GUUUa uuucguuggu  
  CUU   G     CAU     g          g 

Annotation confidence Low

Genome context

ABKE03000041.1: 2448203-2448267 [+]

Mature ppc-miR-8344-5p

• Accession: MIMAT0033234
• Description: Pristionchus pacificus ppc-miR-8344-5p mature miRNA
• Sequence: 1 - GCUGCGGAGGAUUUAGAUG - 19
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8344-3p

• Accession: MIMAT0033235
• Description: Pristionchus pacificus ppc-miR-8344-3p mature miRNA
• Sequence: 45 - UUUGUACUCCUCGCGUUUCGC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260