miRBase entry: ppc-mir-8286b

Stem-loop ppc-mir-8286b

Accession

MI0027052

Description

Pristionchus pacificus ppc-mir-8286b precursor miRNA

Sequence

ACCGCACCUUGCUCUAUCCAUCucgaauugagugaguUGGCAAGAACUUUGGCACG
.(((...((((((..((.((.(((.....))))).)).)))))).....)))....

Structure

---A   --CAC      CU  C  U   g 
    CCG     CUUGCU  AU CA Cuc a
    |||     ||||||  || || ||| a
    GGU     GAACGG  ug gu gag u
GCAC   UUCAA      -U  a  -   u

Annotation confidence Not enough data

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Genome context

ABKE03000123.1: 4491103-4491158 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8286b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8286b-5p

Accession	MIMAT0033240
Description	Pristionchus pacificus ppc-miR-8286b-5p mature miRNA
Sequence	1 - ACCGCACCUUGCUCUAUCCAUC - 22
Evidence	experimental SOLiD [1]

Mature ppc-miR-8286b-3p

Accession	MIMAT0033241
Description	Pristionchus pacificus ppc-miR-8286b-3p mature miRNA
Sequence	38 - UGGCAAGAACUUUGGCACG - 56
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260