Stem-loop ppc-mir-8286b

Accession

MI0027052

Description

Pristionchus pacificus ppc-mir-8286b precursor miRNA

Sequence

ACCGCACCUUGCUCUAUCCAUCucgaauugagugaguUGGCAAGAACUUUGGCACG
.(((...((((((..((.((.(((.....))))).)).)))))).....)))....

Structure

---A   --CAC      CU  C  U   g 
    CCG     CUUGCU  AU CA Cuc a
    |||     ||||||  || || ||| a
    GGU     GAACGG  ug gu gag u
GCAC   UUCAA      -U  a  -   u 

Annotation confidence Low

Genome context

ABKE03000123.1: 4491103-4491158 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8286b

Mature ppc-miR-8286b-5p

• Accession: MIMAT0033240
• Description: Pristionchus pacificus ppc-miR-8286b-5p mature miRNA
• Sequence: 1 - ACCGCACCUUGCUCUAUCCAUC - 22
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8286b-3p

• Accession: MIMAT0033241
• Description: Pristionchus pacificus ppc-miR-8286b-3p mature miRNA
• Sequence: 38 - UGGCAAGAACUUUGGCACG - 56
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260