miRBase entry: ppc-mir-8348

Stem-loop ppc-mir-8348

Accession

MI0027054

Description

Pristionchus pacificus ppc-mir-8348 precursor miRNA

Sequence

ACUCCGAGUUUCGAUCGGGAACagcauaugagacgaguUCCCGAAGAAUCUCAGAGUCA
((((.(((.(((..((((((((..............)))))))).))).))).))))..

Structure

--    C   U   GA        agcaua 
  ACUC GAG UUC  UCGGGAAC      u
  |||| ||| |||  ||||||||       
  UGAG CUC AAG  AGCCCUug      g
AC    A   U   -A        agcaga

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 226430-226488 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ppc-mir-8348

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8348-5p

Accession	MIMAT0033244
Description	Pristionchus pacificus ppc-miR-8348-5p mature miRNA
Sequence	1 - ACUCCGAGUUUCGAUCGGGAAC - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8348-3p

Accession	MIMAT0033245
Description	Pristionchus pacificus ppc-miR-8348-3p mature miRNA
Sequence	39 - UCCCGAAGAAUCUCAGAGUCA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260