miRBase entry: ppc-mir-8349

Stem-loop ppc-mir-8349

Accession

MI0027055

Description

Pristionchus pacificus ppc-mir-8349 precursor miRNA

Sequence

UUUUGAUUGCACGAUAACGUCAgauagaugcugcugcgaauucugCUGCUAUCGAGCCAAUCAAAACC
((((((((((.(((((.((.((((....(((....)))...)))).)).))))).).)))))))))..

Structure

--         - A     A  U    uaga   u 
  UUUUGAUUG C CGAUA CG CAga    ugc g
  ||||||||| | ||||| || ||||    |||  
  AAAACUAAC G GCUAU GU gucu    gcg c
CC         C A     C  C    -uaa   u

Annotation confidence Not enough data

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Genome context

ABKE03000108.1: 80459-80526 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8349

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8349-5p

Accession	MIMAT0033246
Description	Pristionchus pacificus ppc-miR-8349-5p mature miRNA
Sequence	1 - UUUUGAUUGCACGAUAACGUCA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8349-3p

Accession	MIMAT0033247
Description	Pristionchus pacificus ppc-miR-8349-3p mature miRNA
Sequence	46 - CUGCUAUCGAGCCAAUCAAAACC - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260