miRBase entry: ppc-mir-8282b

Stem-loop ppc-mir-8282b

Accession

MI0027057

Description

Pristionchus pacificus ppc-mir-8282b precursor miRNA

Sequence

UUACCGAUAAUGACGUCAUUGCUguaauucgaucagcUAUGGCAUUGUUCUUGGUGACA
(((((((.(((((.(((((.((((.........)))).))))).))))).)))))))..

Structure

--       U     C     U    uaa 
  UUACCGA AAUGA GUCAU GCUg   u
  ||||||| ||||| ||||| ||||   u
  AGUGGUU UUGUU CGGUA cgac   c
AC       C     A     U    uag

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 226545-226603 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ppc-mir-8282b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8282b-5p

Accession	MIMAT0033250
Description	Pristionchus pacificus ppc-miR-8282b-5p mature miRNA
Sequence	1 - UUACCGAUAAUGACGUCAUUGCU - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8282b-3p

Accession	MIMAT0033251
Description	Pristionchus pacificus ppc-miR-8282b-3p mature miRNA
Sequence	38 - UAUGGCAUUGUUCUUGGUGACA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260