miRBase entry: ppc-mir-8350

Stem-loop ppc-mir-8350

Accession

MI0027058

Description

Pristionchus pacificus ppc-mir-8350 precursor miRNA

Sequence

GGCGACUUGCCCGGAAUCAAACaugaucaugUGCUUCCGGAGCGAGUCGUCGAA
((((((((((((((((....((((....))))..)))))).))))))))))...

Structure

---          -      UCAA    g 
   GGCGACUUGC CCGGAA    ACau a
   |||||||||| ||||||    ||||  
   CUGCUGAGCG GGCCUU    Ugua u
AAG          A      --CG    c

Annotation confidence Not enough data

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Genome context

ABKE03000092.1: 2614091-2614144 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8350

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8350-5p

Accession	MIMAT0033252
Description	Pristionchus pacificus ppc-miR-8350-5p mature miRNA
Sequence	1 - GGCGACUUGCCCGGAAUCAAAC - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8350-3p

Accession	MIMAT0033253
Description	Pristionchus pacificus ppc-miR-8350-3p mature miRNA
Sequence	32 - UGCUUCCGGAGCGAGUCGUCGAA - 54
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260