miRBase entry: ppc-mir-8351

Stem-loop ppc-mir-8351

Accession

MI0027059

Description

Pristionchus pacificus ppc-mir-8351 precursor miRNA

Sequence

UACUCGGCUCUGCCAGUCUUUCAuguugccuuuuuguccuuugUGAGACGACAGUGCCGAGAGGC
..((((((.(((...(((((.((....((......))....)).)))))..))).))))))....

Structure

--UA      U   CCA     U  uguu  cu 
    CUCGGC CUG   GUCUU CA    gc  u
    |||||| |||   ||||| ||    ||   
    GAGCCG GAC   CAGAG gu    ug  u
CGGA      U   -AG     U  uucc  uu

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 225677-225741 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from ppc-mir-8351

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8351-5p

Accession	MIMAT0033254
Description	Pristionchus pacificus ppc-miR-8351-5p mature miRNA
Sequence	1 - UACUCGGCUCUGCCAGUCUUUCA - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8351-3p

Accession	MIMAT0033255
Description	Pristionchus pacificus ppc-miR-8351-3p mature miRNA
Sequence	44 - UGAGACGACAGUGCCGAGAGGC - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260