Stem-loop ppc-mir-8352

Accession

MI0027060

Description

Pristionchus pacificus ppc-mir-8352 precursor miRNA

Sequence

UGUGCGUCGAUUGAUUGCCAACUggaucguuaagcacgUUGGCAGUGUCUCGAGGCAUAGU
(((((.((((...(((((((((((..........)).)))))))))...)))).)))))..

Structure

--     G    UUG         -  gauc 
  UGUGC UCGA   AUUGCCAAC Ug    g
  ||||| ||||   ||||||||| ||     
  AUACG AGCU   UGACGGUUg ac    u
UG     G    CUG         c  gaau 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 237989-238049 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppc-mir-8352

Mature ppc-miR-8352-5p

• Accession: MIMAT0033256
• Description: Pristionchus pacificus ppc-miR-8352-5p mature miRNA
• Sequence: 1 - UGUGCGUCGAUUGAUUGCCAACU - 23
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8352-3p

• Accession: MIMAT0033257
• Description: Pristionchus pacificus ppc-miR-8352-3p mature miRNA
• Sequence: 39 - UUGGCAGUGUCUCGAGGCAUAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260