Stem-loop ppc-mir-8282c

Accession

MI0027061

Description

Pristionchus pacificus ppc-mir-8282c precursor miRNA

Sequence

UUACCACGAAUUAUUCCAUAUCuguacugccaucagaUAUGGAGGUAUUCUUGGUAUCA
.(((((.((((..(((((((((((.........)))))))))))..)))).)))))...

Structure

--U     C    UA           uac 
   UACCA GAAU  UUCCAUAUCug   u
   ||||| ||||  |||||||||||   g
   AUGGU CUUA  GAGGUAUagac   c
ACU     U    UG           uac 

Annotation confidence Not enough data

Genome context

ABKE03000073.1: 227223-227281 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from ppc-mir-8282c

Mature ppc-miR-8282c-5p

• Accession: MIMAT0033258
• Description: Pristionchus pacificus ppc-miR-8282c-5p mature miRNA
• Sequence: 1 - UUACCACGAAUUAUUCCAUAUC - 22
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8282c-3p

• Accession: MIMAT0033259
• Description: Pristionchus pacificus ppc-miR-8282c-3p mature miRNA
• Sequence: 38 - UAUGGAGGUAUUCUUGGUAUCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260