miRBase entry: ppc-mir-8356a

Stem-loop ppc-mir-8356a

Accession

MI0027069

Description

Pristionchus pacificus ppc-mir-8356a precursor miRNA

Sequence

AAUUUGAGACUCGCAUGAUUGCAuaguaugaugaagaugUAUCAUGUUGAUUCUCAAAUUCA
(((((((((.(((((((((.((((............)))))))))).))).)))))))))..

Structure

--         C   -      U    aguau 
  AAUUUGAGA UCG CAUGAU GCAu     g
  ||||||||| ||| |||||| ||||      
  UUAAACUCU AGU GUACUA Ugua     a
AC         U   U      -    gaagu

Annotation confidence Not enough data

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Genome context

ABKE03000073.1: 236205-236266 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-8356a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8356a-5p

Accession	MIMAT0033274
Description	Pristionchus pacificus ppc-miR-8356a-5p mature miRNA
Sequence	1 - AAUUUGAGACUCGCAUGAUUGCA - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8356a-3p

Accession	MIMAT0033275
Description	Pristionchus pacificus ppc-miR-8356a-3p mature miRNA
Sequence	40 - UAUCAUGUUGAUUCUCAAAUUCA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260