Stem-loop ppc-mir-84f

Accession

MI0027075

Description

Pristionchus pacificus ppc-mir-84f precursor miRNA

Literature search

1 open access papers mention ppc-mir-84f
(1 sentences)

Sequence

3217 reads, 193.0 reads per million, 11 experiments

UGAGGUAGUUAUAAAUGAAGUGAUGaccaugcaacauucUGUUCAUUUUUUCUACCUCACC
((((((((....(((((((..((..............))..)))))))...))))))))..

Structure

--        UUAU       GU  UGacca 
  UGAGGUAG    AAAUGAA  GA      u
  ||||||||    |||||||  ||       
  ACUCCAUC    UUUACUU  cu      g
CC        -UUU       GU  uacaac 

Annotation confidence High

Genome context

ABKE03000008.1: 1930585-1930645 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-84f

Mature ppc-miR-84f-5p

• Accession: MIMAT0033286
• Description: Pristionchus pacificus ppc-miR-84f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUAUAAAUGAAGUGAUG - 25
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-84f-3p

• Accession: MIMAT0033287
• Description: Pristionchus pacificus ppc-miR-84f-3p mature miRNA
• Sequence: 40 - UGUUCAUUUUUUCUACCUCACC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260