Stem-loop str-mir-7880b-1

Accession

MI0027084

Description

Strongyloides ratti str-mir-7880b-1 precursor miRNA

Sequence

UGGCUUGGAUCUUUCUGCAAACAuguuucaaauacauuUUUGCGACCGAAUCCAGGCCACG
(((((((((((..((.(((((.((((.......)))).)))))))..).))))))))))..

Structure

--          - UU  U     C    uu 
  UGGCUUGGAU C  UC GCAAA Augu  c
  |||||||||| |  || ||||| ||||  a
  ACCGGACCUA G  AG CGUUU uaca  a
GC          A CC  -     u    ua 

Annotation confidence Low

Genome context

Sratti_scf00001_ChrX: 2081900-2081960 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880b-1

Mature str-miR-7880b-1-5p

• Accession: MIMAT0033304
• Description: Strongyloides ratti str-miR-7880b-1-5p mature miRNA
• Sequence: 1 - UGGCUUGGAUCUUUCUGCAAACA - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880b-3p

• Accession: MIMAT0033305
• Description: Strongyloides ratti str-miR-7880b-3p mature miRNA
• Sequence: 39 - UUUGCGACCGAAUCCAGGCCACG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260