Stem-loop str-mir-7880b-2

Accession

MI0027086

Description

Strongyloides ratti str-mir-7880b-2 precursor miRNA

Sequence

UGGUUGGAUCGAUCUGCAAACAugauauguaaucguuUUUGCGACCGAAUCCAGGCCACG
(((((((((((.((.(((((.(((((.....))))).))))))).)).))))).))))..

Structure

--    -     -  A  U     C     a 
  UGGU UGGAU CG UC GCAAA Augau u
  |||| ||||| || || ||||| ||||| g
  ACCG ACCUA GC AG CGUUU ugcua u
GC    G     A  C  -     u     a 

Annotation confidence Low

Genome context

Sratti_scf00001_ChrX: 2081229-2081288 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880b-2

Mature str-miR-7880b-3p

• Accession: MIMAT0033305
• Description: Strongyloides ratti str-miR-7880b-3p mature miRNA
• Sequence: 38 - UUUGCGACCGAAUCCAGGCCACG - 60
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880b-2-5p

• Accession: MIMAT0033308
• Description: Strongyloides ratti str-miR-7880b-2-5p mature miRNA
• Sequence: 1 - UGGUUGGAUCGAUCUGCAAACA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260