Stem-loop str-mir-7880c

Accession

MI0027089

Description

Strongyloides ratti str-mir-7880c precursor miRNA

Sequence

1691754 reads, 31094.0 reads per million, 12 experiments

UGGCUGGAGUUGGAGCAAAUGUaguuuuguauccuaaaUUUGCGACCGAAUCCAAGCCUGa
.(((((((.((((.((((((.(((.........))).))))))..)))).))).))))...

Structure

--U    -   G    -A      G   uuu 
   GGCU GGA UUGG  GCAAAU Uag   u
   |||| ||| ||||  |||||| |||   g
   CCGA CCU AGCC  CGUUUa auc   u
aGU    A   A    AG      a   cua 

Annotation confidence High

Genome context

Sratti_scf00001_Chr01: 397177-397237 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880c

Mature str-miR-7880c-5p

• Accession: MIMAT0033311
• Description: Strongyloides ratti str-miR-7880c-5p mature miRNA
• Sequence: 1 - UGGCUGGAGUUGGAGCAAAUGU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880c-3p

• Accession: MIMAT0033312
• Description: Strongyloides ratti str-miR-7880c-3p mature miRNA
• Sequence: 39 - UUUGCGACCGAAUCCAAGCCUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260