Stem-loop str-mir-7880e-1

Accession

MI0027093

Description

Strongyloides ratti str-mir-7880e-1 precursor miRNA

Sequence

UGGACUGGAUAGUUGCAAACAuaaucuuuauuuauuUUUGCGACCAAAUCCAGGCCACG
(((.((((((.((((((((.((((.......)))).))))))))...)))))).)))..

Structure

--   A      --A        C    uc 
  UGG CUGGAU   GUUGCAAA Auaa  u
  ||| ||||||   |||||||| ||||  u
  ACC GACCUA   CAGCGUUU uauu  u
GC   G      AAC        u    ua 

Annotation confidence Low

Genome context

Sratti_scf00001_ChrX: 2081653-2081711 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880e-1

Mature str-miR-7880e-5p

• Accession: MIMAT0033319
• Description: Strongyloides ratti str-miR-7880e-5p mature miRNA
• Sequence: 1 - UGGACUGGAUAGUUGCAAACA - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880e-3p

• Accession: MIMAT0033320
• Description: Strongyloides ratti str-miR-7880e-3p mature miRNA
• Sequence: 37 - UUUGCGACCAAAUCCAGGCCACG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260